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Evolution of acoustic communication in crickets: phylogeny of Eneopterinae reveals an adaptive radiation involving high-frequency calling (Orthoptera, Grylloidea, Eneopteridae) Anais da ABC (AABC)
Robillard,Tony; Desutter-Grandcolas,Laure.
Evolution of dominant frequencies in songs of Eneopterinae crickets was studied with respect to phylogeny. Two characters are optimized on the tree: the first describes the frequency resulting from the vibration of the harp (Fda), and the second is due to the vibration of other tegminal areas (Fdb). Fda was found to be relatively stable through the subfamily. Its low ancestral state is replaced by a high Fda only once, resulting in high-frequency calling in [Cardiodactylus (Lebinthus-Agnotecous)]. A high Fdb component is added to the low ancestral Fda in Eneoptera guyanensis, resulting in frequency modulation. The onset of high Fd in this first subclade is accompanied by a high cladogenesis rate, which supports a hypothesis of adaptive radiation for high...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Acoustic communication; Adaptation; Cladogenesis; Ensifera; Evolutionary pattern; Phylogeny.
Ano: 2004 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652004000200018
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Evolution of Blennioidel in the Mediterranean Sea ArchiMer
Zander, C. Dieter.
The evolution of 2 spp belonging to the gen Tripterygion and some spp of the gen Blennius is discussed. Tripterygion tripteronotus and T. xanthosoma have very similar morphological characters yet live in 2 distinct niches. This probably results from 2 separate immigrations into the Mediterranean at different eras after the glacial age. After establishing reproductive barriers these populations would have evolved into 2 distinct spp. In contrast the spp of the gen Blennius were endemic in the Mediterranean and their evolution must have taken place after the end of the glacial age. During this lapse of time, multiple differentiations which might have taken place would account for the presence of sibling spp having comparable morphological characters but...
Tipo: Text Palavras-chave: Mediterranean Sea; Geographical distribution; Morphology; Phylogeny; Blenniidei.
Ano: 1973 URL: http://archimer.ifremer.fr/doc/1973/publication-2166.pdf
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Evolution of hematophagous habit in Triatominae (Heteroptera: Reduviidae) RChHN
Otálora-Luna,Fernando; Pérez-Sánchez,Antonio J; Sandoval,Claudia; Aldana,Elis.
All members of Triatominae subfamily (Heteroptera: Reduviidae), potential vectors of Trypanosoma cruzi etiologic agent of the Chagas disease, feed on blood. Through evolution, these bugs have fixed special morphological, physiological, and behavioral aptations (adaptations and exaptations) adequate to feed on blood. Phylogeny suggests that triatomines evolved from predator reduvids which in turn descended from phytophagous hemipterans. Some pleisiomorphic traits developed by the reduvid ancestors of the triatomines facilitated and modeled hematophagy in these insects. Among them, mouthparts, saliva composition, enzymes, and digestive symbionts are the most noticeable. However, the decisive step that allowed the shift from predation to hematophagy was a...
Tipo: Journal article Palavras-chave: Latin America; Chagas' disease; Phylogeny; Blood-sucking habit; Triatomines.
Ano: 2015 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0716-078X2015000100004
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Evolution of Janthina and Recluzia (Mollusca: Gastropoda: Epitoniidae) ArchiMer
Beu, A. G..
Fossil and living neustonic gastropods referred previously to Janthinidae are revised and included in Epitoniidae. Species recognized in Janthina Röding, 1798 (= Iodes, Iodina and Amethistina Mörch, 1860, Hartungia Bronn, 1861, Heligmope Tate, 1893, Violetta Iredale, 1929, Parajanthina Tomida & Itoigawa, 1982, and Kaneconcha Kaim, Tucholke & Warén, 2012) are J. typica (Bronn), Messinian–early Piacenzian (latest Miocene–early late Pliocene), c. 7–3.0 Ma (New Zealand, southern Australia, Japan, Morocco, dredged off Brazil, Madeira, Gran Canaria I., Selvagem Grande I., and Santa Maria I., Azores); J. krejcii sp. nov., Zanclean (early Pliocene), c. 4.8–4.3 Ma (Santa Maria I.); J. chavani (Ludbrook), late Piacenzian–early Calabrian (latest...
Tipo: Text Palavras-chave: Biostratigraphy; Cosmopolitan; Fossil record; Neustonic gastropods; Pleistocene; Pliocene; Phylogeny.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00403/51476/52047.pdf
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Evolution of seed dispersal in the Cerrado biome: ecological and phylogenetic considerations Acta Botanica
Kuhlmann,Marcelo; Ribeiro,José Felipe.
ABSTRACT The investigation of the phylogeny of a group of organisms has the potential to identify ecological and evolutionary processes that have been occurring within a community. Seed dispersal is a key process in the life cycle of vegetation and reflects different reproductive strategies of plants to a set of ecological and evolutionary factors. Knowing the dispersal syndromes and fruits types of a plant community may help elucidate plant-animal interactions and colonization strategies of plants. We investigated dispersal syndromes and fruit types in Cerrado formations as a parameter for understanding the evolution of angiosperm reproductive strategies in this mega-diverse tropical biome. To do this we identified and mapped the distribution of different...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Dispersal strategies; Forest; Fruit types; Grassland; Life forms; Phylogeny; Savanna.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062016000200271
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Evolutionary analysis of apolipoprotein E by Maximum Likelihood and complex network methods Genet. Mol. Biol.
Benevides,Leandro de Jesus; Carvalho,Daniel Santana de; Andrade,Roberto Fernandes Silva; Bomfim,Gilberto Cafezeiro; Fernandes,Flora Maria de Campos.
Abstract Apolipoprotein E (apo E) is a human glycoprotein with 299 amino acids, and it is a major component of very low density lipoproteins (VLDL) and a group of high-density lipoproteins (HDL). Phylogenetic studies are important to clarify how various apo E proteins are related in groups of organisms and whether they evolved from a common ancestor. Here, we aimed at performing a phylogenetic study on apo E carrying organisms. We employed a classical and robust method, such as Maximum Likelihood (ML), and compared the results using a more recent approach based on complex networks. Thirty-two apo E amino acid sequences were downloaded from NCBI. A clear separation could be observed among three major groups: mammals, fish and amphibians. The results...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Apolipoprotein E; Phylogeny; Complex network; Maximum Likelihood.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000400665
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Evolutionary history of the seagrass genus Posidonia ArchiMer
Aires, Tania; Marba, Nuria; Cunha, Regina L.; Kendrick, Gary A.; Walker, Diana I.; Serrao, Ester A.; Duarte, Carlos M.; Arnaud-haond, Sophie.
Seagrasses are the structural species of one of the most important coastal ecosystems worldwide and support high levels of biodiversity and biomass production. Posidonia is one of the most ancient seagrass genera and displays a contrasting disjunct biogeographic pattern. It contains one single species in the Northern Hemisphere, P. oceanica, which is endemic to the Mediterranean Sea, and has up to 8 recognized taxa in the Southern Hemisphere, which in Australia are divided into 2 complexes, P. ostenfeldii and P. australis. A phylogeny based on a nuclear marker (rRNA-ITS) revealed an ancient split between the northern (i.e. Mediterranean) and southern (i.e. Australian) taxa, followed by a separation of the 2 recognized Australian complexes. However, the...
Tipo: Text Palavras-chave: Posidonia; Phylogeny; Low evolutionary rates; Ancient diversification.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00027/13798/10937.pdf
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Exon-primed intron-crossing (EPIC) markers as a tool for ant phylogeography Rev. Bras. entomol.
Ströher,Patrícia R.; Li,Chenhong; Pie,Marcio R..
Exon-primed intron-crossing (EPIC) markers as a tool for ant phylogeography. Due to their local abundance, diversity of adaptations and worldwide distribution, ants are a classic example of adaptive radiation. Despite this evolutionary and ecological importance, phylogeographical studies on ants have relied largely on mitochondrial markers. In this study we design and test exon-primed intron-crossing (EPIC) markers, which can be widely used to uncover ant intraspecific variation. Candidate markers were obtained through screening the available ant genomes for unlinked conserved exonic regions interspersed with introns. A subset of 15 markers was tested in vitro and showed successful amplification in several phylogenetically distant ant species. These...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Formicidae; Molecular markers; Phylogeny; Population genetics.
Ano: 2013 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262013000400014
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Expanding the distribution of the Aquificales to the deep-sea vents on Mid-Atlantic Ridge and Central Indian Ridge ArchiMer
Reysenbach, Anna-louise; Gotz, Dorothée; Banta, Amy; Jeanthon, Christian; Fouquet, Yves.
Introduction : Recently, the use of culture-independent molecular phylogenetic techniques has greatly increased our inventory of archaeal and bacterial diversity at deep-sea vents (e.g. Harmsen et al., 1997; Reysenbach et al., 2000; Takai et al., 2001) and several of the lineages appear to be endemic to deep-sea vents (Reysenbach et al., 2000b; Takai et al, 2000; Longnecker & Reysenbach, 2001). Using environmental data, some of these lineages have now been cultivated (L'Haridon et al., 1998; Campbell et al., 2001). For example, until recently, the chemolithoautotrophic and thermophilic bacterial lineage, the Aquificales, was restricted to shallow marine vents and terrestrial thermal springs. However, as part of two independent studies, one in...
Tipo: Text Palavras-chave: Phylogeny; Aquificales; Hydrothermal vent; Deep sea.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/2002/publication-894.pdf
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Families and genera of diaporthalean fungi associated with canker and dieback of tree hosts Naturalis
Fan, X.L.; Bezerra, J.D.P.; Tian, C.M.; Crous, P.W..
In this study we accept 25 families in Diaporthales based on phylogenetic analyses using partial ITS, LSU, rpb2 and tef1-α gene sequences. Four different families associated with canker and dieback of tree hosts are morphologically treated and phylogenetically compared. These include three new families (Diaporthostomataceae, Pseudomelanconidaceae, Synnemasporellaceae), and one new genus, Dendrostoma (Erythrogloeaceae). Dendrostoma is newly described from Malus spectabilis, Osmanthus fragrans and Quercus acutissima having fusoid to cylindrical, bicellular ascospores, with three new species namely D. mali, D. osmanthi and D. quercinum. Diaporthostomataceae is characterised by conical and discrete perithecia with bicellular, fusoid ascospores on branches of...
Tipo: Article / Letter to the editor Palavras-chave: Ascomycota; Phylogeny; Sordariomycetes; Taxonomy.
Ano: 2018 URL: http://www.repository.naturalis.nl/record/643333
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First complete description of nest, eggs, and nestlings of the Squamate Antbird, Myrmoderus squamosus (Aves: Thamnophilidae) Rev. Bras. Zool.
Perrella,Daniel F.; Piacentini,Vitor Q.; Zima,Paulo V.Q.; Biagolini-Jr.,Carlos; Ribeiro-Silva,Lais; Francisco,Mercival R..
ABSTRACT Even though nest architecture has been useful for phylogenetic inferences among the Thamnophilidae (Aves: Passeriformes), the nests of only three out of five species of Myrmoderus (Ridgway, 1909) are known to science. Here we describe the nests, eggs, and nestling of the Squamate Antbird Myrmoderus squamosus (Pelzeln, 1868). Two nests were bulky bottom-supported cups, measuring 7.3 and 12 cm in maximum outside diameter, with a noticeably smaller egg cup, and they were placed within the crown of short, broad-leafed plants. Eggs were short-oval, with chalky white background color, and purple blotches and streaks more concentrated in the large end. One nestling was dark reddish grey, with bluish white feet, pinkish gray tarsi, and a blackish bill...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Myrmeciza; Nest type; Phylogeny; Taxonomy.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702019000100320
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First report of goniodomin A production by the dinoflagellate Alexandrium pseudogonyaulax developing in southern Mediterranean (Bizerte Lagoon, Tunisia) ArchiMer
Triki, Habiba Zmerli; Laabir, Mohamed; Moeller, Peter; Chomerat, Nicolas; Daly-yahia, Ons Kefi.
The dinoflagellate Alexandrium pseudogonyaulax is widely distributed around the world including the Mediterranean waters. The objectives of this study were to determine the morphology and phylogenic affiliation of A. pseudogonyaulax strain isolated from Bizerte Lagoon (Mediterranean waters, Tunisia) and investigate its toxicity. Molecular analyses confirmed the morphological identification of the isolated strain (APBZ12) as A. pseudogonyaulax. Moreover, it showed that it is 100% identical with strains of this species found in New Zealand, Japan, China and North Sea (Norway and Denmark) suggesting that this species is cosmopolitan. Until now, no toxin studies have been conducted on fully characterized (morphologically and molecularly) A. pseudogonyaulax....
Tipo: Text Palavras-chave: Alexandrium pseudogonyaulax; Goniodomin A; Mediterranean sea; Morphology; Phylogeny.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00302/41356/40548.pdf
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Fissuroma (Aigialaceae: Pleosporales) appears to be hyperdiverse on Arecaceae: evidence from two new species from southern Thailand Acta Botanica
Konta,Sirinapa; Hyde,Kevin David; Eungwanichayapant,Prapassorn Damrongkool; Doilom,Mingkwan; Tennakoon,Danushka Sandaruwan; Senwanna,Chanokned; Boonmee,Saranyaphat.
ABSTRACT Thailand and other tropical regions have high fungal diversity. Our investigation and examination of microfungi on palms (Arecaceae) revealed two new ascomycetous species of Fissuroma. Fissuroma arengae and F. wallichiae spp. nov. are introduced using morphological and phylogenetic evidence. The novel species have coriaceous ascomata, cylindrical-clavate asci and ascospores with a distinct and thin mucilaginous sheath. Fissuroma arengae is similar to F. wallichiae but can be distinguished by minor morphology, host substrate and gene base-pair differences. Phylogenetic analyses of combined LSU, ITS, SSU, tef1-α and rpb2 sequence data showed that these strains grouped within Fissuroma, further confirming this genus as monophyletic. The two new...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Morphology; Palm fungi; Phylogeny; Thai fungi; Two novel taxa.
Ano: 2020 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062020000200384
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Fossils and decapod phylogeny Naturalis
Schram, Frederick R.; Dixon, Christopher.
An expanded series of morphological characters developed for a cladistic analysis of extant decapods has yielded a new hypothesis for the phylogeny of the group. Application of this database to selected fossil genera produces some interesting results and demonstrates the feasibility of treating fossils as full and equal partners in the study of decapod phylogenetic relationships. In addition, it seems clear that rigorous cladistic methods can be used to evaluate the phylogenetic positions of fossils, rather than ad hoc speculation.
Tipo: Article / Letter to the editor Palavras-chave: Decapoda; Phylogeny; Cladistics.
Ano: 2003 URL: http://www.repository.naturalis.nl/record/534342
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From Cavolinia longirostris to twenty-four Diacavolinia taxa, with a phylogenetic discussion (Mollusca, Gastropoda) Naturalis
Spoel, S. van der; Bleeker, J.; Kobayasi, H..
The six already known infraspecific taxa in Cavolinia longirostris (De Blainville, 1821), presently in the genus Diacavolinia, are raised to species rank and sixteen species and two formae new to science are described in this genus from different oceanic areas. Some shell structures in the Cavoliniinae are described for the first time and the phylogeny of the group is discussed.
Tipo: Article / Letter to the editor Palavras-chave: Taxonomy; Pteropoda; Cavoliniidae; Diacavolinia; New species; Phylogeny.
Ano: 1993 URL: http://www.repository.naturalis.nl/record/503859
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Fungal pathogens of Proteaceae Naturalis
Crous, P.W.; Summerell, B.A.; Swart, L.; Denman, S.; Taylor, J.E.; Bezuidenhout, C.M.; Palm, M.E.; Marincowitz, S.; Groenewald, J.Z..
Species of Leucadendron, Leucospermum and Protea (Proteaceae) are in high demand for the international floriculture market due to their brightly coloured and textured flowers or bracts. Fungal pathogens, however, create a serious problem in cultivating flawless blooms. The aim of the present study was to characterise several of these pathogens using morphology, culture characteristics, and DNA sequence data of the rRNA-ITS and LSU genes. In some cases additional genes such as TEF 1-α and CHS were also sequenced. Based on the results of this study, several novel species and genera are described. Brunneosphaerella leaf blight is shown to be caused by three species, namely B. jonkershoekensis on Protea repens, B. nitidae sp. nov. on Protea nitida and B....
Tipo: Article / Letter to the editor Palavras-chave: Biodiversity; Cut-flower industry; Fungal pathogens; ITS; LSU; Phylogeny; Systematics.
Ano: 2012 URL: http://www.repository.naturalis.nl/record/532487
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Genealogy in Microspora (Chlorophyceae) Naturalis
Jong, Y.S.D.M. de; Lokhorst, G.M.; Kruijer, J.D..
The genealogical relationships in the green algal genus Microspora (Chlorophyceae) are determined by phylogenetic analysis based on 15 ecological, morphological and reproductive characters. It is found that the traditional defining characters like cell shape and distinctness of the H-shaped pieces (composing the cell wall) play a major role in rooting of the cladograms and that species – forming a prominent rope-like growth habit in rapid streams – are closely related. It is suggested that the pH value of the habitat proves to give a more substantial phylogenetic signal than the type of water movement.
Tipo: Article / Letter to the editor Palavras-chave: Chlorophyceae; Microspora; Cladistics.; Phylogeny.
Ano: 2000 URL: http://www.repository.naturalis.nl/record/524639
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Genetic and morphological differences of Haematobia irritans and H. exigua, and molecular phylogeny of Japanese Stomoxyini flies (Diptera, Muscidae) OAK
IWASA, Mitsuhiro; ISHIGURO, Naotaka; 岩佐, 光啓; 石黒, 直隆.
Molecular analysis based on mitochondrial DNA (mtDNA) sequence was performed to elucidate the genetic difference between Haematobia irritans (Linnaeus) and H. exigua (de Meijere), and the phylogenetic relationship among Japanese Stomoxyini species (Stomoxys calcitrans (Linnaeus), S. indicus Picard, S. uruma Shinonaga et Kano, and Haematobosca sanguinolenta (Austen) including Haematobia). Two populations obtained from Obihiro and Morioka which were morphologically identified as H. irritans were genetically identical. Two populations obtained from Taiwan and Vietnam which were morphologically identified as H. exigua were almost genetically identical, but there was a small divergence (0.3-0.4%) between them. Nucleotide sequence divergences between H. irritans...
Palavras-chave: Haematobia irritans; Haematobia exigua; MtDNA sequence; Japanese Stomoxyini; Phylogeny.
Ano: 2010 URL: http://ir.obihiro.ac.jp/dspace/handle/10322/3286
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Genetic and taxonomic relationships of five species of Rallidae (Aves: Gruiformes) based on mitochondrial cytochrome oxidase subunit I sequences Animal Sciences
Deef, Lamiaa Elsayed Mokhtar.
This is the first study to detection the genetic relationship between Porphyrio alleni and four Rallidae species: Fulica atra, Gallinulla angulata, Gallinulla chloropus and Porphyrio porphyrio. Mitochondrial cytochrome oxidase subunit I (COI) sequences were used as an effective marker in this study. DNA of Rallidae species were extracted, amplified using polymerase chain reaction (PCR) and then sequenced. The results obtained from information based on COI sequences revealed that Gallinulla angulata and Gallinulla chloropus fall into two separate clades and they are not monophyletic. This suggests that, two moorhens could not be laid into the same genus. In addition, Porphyrio porphyrio was included in the same genus with Porphyrio alleni but they were...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Birds; Gruiformes; PCR; Phylogeny; Sequencing; Species..
Ano: 2018 URL: http://periodicos.uem.br/ojs/index.php/ActaSciAnimSci/article/view/37184
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Genetic characterization and nitrogen fixation capacity of Rhizobium strains on common bean PAB
González,Tehuni Orlando; Campanharo,João Carlos; Lemos,Eliana Gertrudes de Macedo.
This study aimed to genetically characterize four new Rhizobium strains, and to evaluate their nodulation and fixation capacity compared to commercial strains and to native rhizobia population of a Brazilian Rhodic Hapludox. Two experiments were carried out in randomized blocks design, under greenhouse conditions, in 2007. In the first experiment, the nodulation and nitrogen fixation capacity of new strains were evaluated, in comparison to the commercial strains CIAT-899 and PRF-81 and to native soil population. It was carried out in plastic tubes filled with vermiculite. DNA extractions and PCR sequencing of the intergenic space were made from the isolated pure colonies, in order to genetically characterize the strains and the native rhizobia population....
Tipo: Info:eu-repo/semantics/article Palavras-chave: Phaseolus vulgaris; Biological nitrogen fixation; Intergenic space; Phylogeny; Sequencing; Soil rhizobia population.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2008000900012
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